Generic Genome Browser, v2 (Cloud Image)
Welcome to the Generic Genome Browser (Cloud Image)!
Documentation
- Online tutorial and sample data files
- /var/www/gbrowse2/tutorial.
- Installation and configuration manual
- GBrowse 2.0 HOWTO
- Example scripts to control GBrowse from the command line
- /var/www/gbrowse2/example_scripts
Starter Databases
A series of starter databases have been preconfigured for you, consisting of:
- S. cerevisiae genome (April 11, sacCer3), Genes and DNA only
- S. cerevisiae, Chromosomes 1+2, (more tracks)
- S. cerevisiae, Chromosomes 1+2, (Chado database)
- C. elegans genome (WS220, ce10), Genes and DNA only
- H. sapiens genome (hg19, GRCh37), Genes and DNA only
You may add additional starter genomes at any time by running the
command line script gbrowse_import_ucsc.pl and providing
the UCSC Genome Browser build name:
gbrowse_import_ucsc.pl mm10 'M. musculus genome (mm10, GRCm38)'
Directory Paths
For future reference, here is where you've installed GBrowse's various
components:
- GBrowse documentation, stylesheets and in-memory databases.
- $HTDOCS
- GBrowse configuration files
- $CONF
- Preinstalled sample database(s)
- $DATABASES
- GBrowse CGI (web) scripts
- $CGIBIN/gbrowse
- $CGIBIN/gbrowse_img
- $CGIBIN/gbrowse_details
- Temporary directories for cached images and sessions.
- $TMP
Learning More
To find out more about Gbrowse, try the:
Lincoln D. Stein, lstein@cshl.org
Cold Spring Harbor Laboratory
Last modified: Thu Mar 18 18:59:16 PDT 2010